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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33409742_33410170_R

Intron Information:

Intron Rank:
15
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
33409742 - 33410170
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
AGAGCAAATGTAG|A
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TTGTTTCCAATA
Flanking Amino Acid:
LLTKFPMQFVEYNKRQMSRI
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.2
56
43.9
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
48.9
-0
1
38.4
38.4
Minor 5ss
94.2
1.49
0.8
86.6
30.5
Minor BPS
48.5
-0.1
1.8
63.38
37.6

Associated Gene:

Gene:
PLCB2
Ensembl Gene ID:
ENSAPLG00000002574
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002672
33393491 - 33439123
45633