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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33410256_33410875_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33410256 - 33410875
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
TTCCTGTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTGTCTAAACA
Flanking Amino Acid:
IKFDSFEVSAQKNRSYVISS
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.3
69.2
43.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80
0.68
0.8
72.7
37.5
Minor 5ss
37.8
-1.4
3.1
54.8
42.5
Minor BPS
65.7
0.49
1.8
78.35
38.8

Associated Gene:

Gene:
PLCB2
Ensembl Gene ID:
ENSAPLG00000002574
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002672
33393491 - 33439123
45633