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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33410973_33411639_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33410973 - 33411639
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTCA
5'SS Class:
major
3'SS Sequence:
TTTTTCTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTTCTATTT
Flanking Amino Acid:
EEIKKMQSDEGTAGLEVTAY
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.3
38.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
78.6
0.64
0.8
73.6
37
Minor 5ss
36
-1.6
3.4
48.5
47.2
Minor BPS
54.8
0.23
1.9
79.65
37.1

Associated Gene:

Gene:
PLCB2
Ensembl Gene ID:
ENSAPLG00000002574
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002672
33393491 - 33439123
45633