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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33417055_33417755_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33417055 - 33417755
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TCTCTCCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
CATGCCTTACCT
Flanking Amino Acid:
RPEIDEIFTSHHLKAKPYMT
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
84.1
0.77
0.7
81.4
23.7
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
62.6
0.47
1.8
76.7
45.7

Associated Gene:

Gene:
PLCB2
Ensembl Gene ID:
ENSAPLG00000002574
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002672
33393491 - 33439123
45633