About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33417857_33418461_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33417857 - 33418461
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GTTTCTTTCATT
Flanking Amino Acid:
LSACHLPKGKNDAINPEDFP
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
78.8
0.65
0.7
77.6
29.9
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
68
0.65
1.7
84.22
37.1

Associated Gene:

Gene:
PLCB2
Ensembl Gene ID:
ENSAPLG00000002574
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002672
33393491 - 33439123
45633