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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33418538_33421061_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33418538 - 33421061
Intron Length:
2524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCTGCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAT
U12 Branch Point Sequence:
TTTTCCCTGTCT
Flanking Amino Acid:
LNAEGKIPVRNIFQMFPADR
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
80.7
33.7
Major BPS
66.1
0.4
1.3
57.1
49.4
Major PPT
66.4
0.37
0.9
65
36.3
Minor 5ss
35.6
-1.6
2.8
42.7
38.3
Minor BPS
47.4
-0.1
3.6
88.28
36.8

Associated Gene:

Gene:
PLCB2
Ensembl Gene ID:
ENSAPLG00000002574
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002672
33393491 - 33439123
45633