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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33421834_33422195_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33421834 - 33422195
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
CCTACCTCCACT
Flanking Amino Acid:
FVSYKENVGKSWAEDIMAIV
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.8
37.5
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
88.7
0.87
0.7
81.3
36.4
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
49.3
0.03
2.1
68.64
47.8

Associated Gene:

Gene:
PLCB2
Ensembl Gene ID:
ENSAPLG00000002574
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002672
33393491 - 33439123
45633