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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3343991_3344207_F

Intron Information:

Intron Rank:
143289
Intron Class:
major
Intron Phase:
Intron Coordinates:
3343991 - 3344207
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AAGTCCTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.7
36.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.8
0.65
1
75.5
38.3
Minor 5ss
32
-2.1
3.6
48.4
47.3
Minor BPS
70.2
0.71
1.5
80.4
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027182
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023832
3342896 - 3344985
2090