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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33470716_33471065_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33470716 - 33471065
Intron Length:
350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
CTGACATAAACG
Flanking Amino Acid:
SFLKDDPDSQRSLGMDKQKS
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
80
0.67
0.7
79.7
25.7
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
46.7
-0.3
2
53
47.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002551
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021864
33469910 - 33513685
43776
ENSAPLT00000002573
33469910 - 33513685
43776
ENSAPLT00000025107
33469910 - 33513685
43776