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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33483082_33492069_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33483082 - 33492069
Intron Length:
8988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTGCCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AATCCCTGAAAT
Flanking Amino Acid:
IAITMDNKEKAEERRTAEKR
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
77.2
0.61
0.9
69.9
36.5
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
61.7
0.45
1.6
76.35
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002551
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021864
33469910 - 33513685
43776
ENSAPLT00000002573
33469910 - 33513685
43776
ENSAPLT00000025107
33469910 - 33513685
43776