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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33492220_33501216_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33492220 - 33501216
Intron Length:
8997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
GTGTCCTTAAAC
Flanking Amino Acid:
LAVTMDNKAKGKRIVSEKRT
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
84.7
0.78
0.8
76.7
37.4
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
74.8
0.76
1.4
76.78
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002551
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025107
33469910 - 33513685
43776
ENSAPLT00000021864
33469910 - 33513685
43776
ENSAPLT00000002573
33469910 - 33513685
43776