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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33501382_33502271_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33501382 - 33502271
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
CTTCATTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
AAGTGCTTCATT
Flanking Amino Acid:
LTITITKAHNDKRVVSEKWS
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.3
78.8
35.5
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
80.3
0.68
0.8
72.4
37.4
Minor 5ss
36.7
-1.5
3.3
49.9
39.7
Minor BPS
48.5
-0
2.2
67.06
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002551
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002573
33469910 - 33513685
43776