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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33525887_33532259_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33525887 - 33532259
Intron Length:
6373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
CCTCCCTTTATT
Flanking Amino Acid:
RRGEPRPQGSREKRNAGPCQ
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
73.2
34.8
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
82.3
0.73
0.7
77.1
24.7
Minor 5ss
30.5
-2.2
3.8
47.1
48.5
Minor BPS
60.9
0.42
1.7
73.22
43.8

Associated Gene:

Gene:
DISP2
Ensembl Gene ID:
ENSAPLG00000002430
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002437
33525249 - 33544312
19064