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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33532713_33534707_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33532713 - 33534707
Intron Length:
1995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCGTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATGACGC
Flanking Amino Acid:
RPVQHHVVTVRHDKAFRMPK
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.9
0.74
0.8
77.1
31.6
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
45
-0.4
2.2
61.44
43.4

Associated Gene:

Gene:
DISP2
Ensembl Gene ID:
ENSAPLG00000002430
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002437
33525249 - 33544312
19064