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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33534738_33537135_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33534738 - 33537135
Intron Length:
2398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
AGTGCCTTAACA
Flanking Amino Acid:
RHDKAFRMPKSYSQMIAEWP
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79
0.65
0.9
70.2
40.1
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
76.4
0.83
1.3
78.77
37.4

Associated Gene:

Gene:
DISP2
Ensembl Gene ID:
ENSAPLG00000002430
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002437
33525249 - 33544312
19064