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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33538060_33538528_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33538060 - 33538528
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGAG
5'SS Class:
major
3'SS Sequence:
CTTCTCTTGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATCTCTCTACTT
Flanking Amino Acid:
FSLSPYTEKKSYDDIGISRG
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
66.9
38.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
74.2
0.54
0.9
69.3
36.9
Minor 5ss
38.2
-1.3
3.1
48.8
47.4
Minor BPS
49.5
0.04
1.9
70.34
41.4

Associated Gene:

Gene:
DISP2
Ensembl Gene ID:
ENSAPLG00000002430
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002437
33525249 - 33544312
19064