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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33538648_33539604_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33538648 - 33539604
Intron Length:
957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCCTTCCTT
Flanking Amino Acid:
GADGFFCGPPEKSYSQLVFM
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
48.3
-0
3.6
87.41
38.9

Associated Gene:

Gene:
DISP2
Ensembl Gene ID:
ENSAPLG00000002430
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002437
33525249 - 33544312
19064