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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33550242_33550547_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33550242 - 33550547
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCATAAATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TATCTCATAAAT
Flanking Amino Acid:
VILESRNIDPVTGSNIVEEE
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
72.2
37.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
65.4
0.35
1
64.1
40.3
Minor 5ss
32
-2.1
3.6
44.7
44.3
Minor BPS
57.4
0.31
1.7
77.18
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016091
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016783
33547037 - 33552080
5044