About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33550803_33551667_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33550803 - 33551667
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCATACAG
Flanking Amino Acid:
AAEKEKEALQMATAKWKLAE
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
82.5
0.73
0.8
77.2
30.6
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
54.2
-0
2.1
69.83
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016091
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016783
33547037 - 33552080
5044