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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33554454_33556369_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33554454 - 33556369
Intron Length:
1916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
TGTTGTGTATTT
Flanking Amino Acid:
DQENEFKGMREFWKKLGELG
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
76.1
0.59
0.9
70.4
40.3
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
43.7
-0.4
2.4
67.71
44.1

Associated Gene:

Gene:
IVD
Ensembl Gene ID:
ENSAPLG00000001128
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001186
33554322 - 33568391
14070