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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33556422_33559182_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33556422 - 33559182
Intron Length:
2761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTTAA
U12 Branch Point Sequence:
TGGTGGTTAACG
Flanking Amino Acid:
ELGVLGITAPVKYGGSALGY
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
57
0.17
1.3
49.4
46
Major PPT
92.7
0.96
0.6
92.4
17.8
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
48.1
-0.2
2.5
59.68
47.8

Associated Gene:

Gene:
IVD
Ensembl Gene ID:
ENSAPLG00000001128
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001186
33554322 - 33568391
14070