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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33563286_33565728_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33563286 - 33565728
Intron Length:
2443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
CTTTTGCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATCAT
U12 Branch Point Sequence:
TTACCAATCATT
Flanking Amino Acid:
ELIFEDCKVPAENVLGALSK
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
61
46.2
Major BPS
68.1
0.45
1.1
69.7
35.6
Major PPT
86.3
0.82
0.8
80.6
31.4
Minor 5ss
43.7
-0.7
2.9
56.4
47.8
Minor BPS
44.7
-0.3
2.2
68.84
41.6

Associated Gene:

Gene:
IVD
Ensembl Gene ID:
ENSAPLG00000001128
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001186
33554322 - 33568391
14070