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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33565823_33567013_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33565823 - 33567013
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TTTCTGTTGATT
Flanking Amino Acid:
ERLVLSGGPLGIMQAVLDHA
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
76.9
38.6
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
76.8
0.6
0.8
70.2
35.4
Minor 5ss
34.7
-1.7
3.8
47.1
48.3
Minor BPS
55.6
0.26
2.1
79.75
36.6

Associated Gene:

Gene:
IVD
Ensembl Gene ID:
ENSAPLG00000001128
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001186
33554322 - 33568391
14070