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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33568148_33568257_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33568148 - 33568257
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCTGC
5'SS Class:
major
3'SS Sequence:
TTTTTGCTCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TGACTTGTAACA
Flanking Amino Acid:
QVALDGIQCLGGNGYINDYP
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
64.4
42.8
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
81.4
0.71
0.8
77.5
31.3
Minor 5ss
44.7
-0.6
2.9
59.8
45
Minor BPS
48.8
-0
2
61.83
38.2

Associated Gene:

Gene:
IVD
Ensembl Gene ID:
ENSAPLG00000001128
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001186
33554322 - 33568391
14070