Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33624871_33626905_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33624871 - 33626905

Intron Length:

2035

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCCAC

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGGTGAC

U12 Branch Point Sequence:

AGCTGGGTGACC

Flanking Amino Acid:

QGGRNPSMHQNEIFASRHQD

Intron Amino Acid Position:

746

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

68.4

38.7

Major BPS

45.4

-0.2

1.4

34.5

43.7

Major PPT

85.6

0.8

0.7

80.2

25.1

Minor 5ss

32.7

-2

45.6

Minor BPS

36.8

-1

2.7

48.01

42.3

Associated Gene:

Gene:

BAHD1

Ensembl Gene ID:

ENSAPLG00000000752

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039100

33612255 - 33629542

17288