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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33626998_33629322_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33626998 - 33629322
Intron Length:
2325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CGTTGCATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TCCACACTAACT
Flanking Amino Acid:
CYVLTFAEYCRFCALAKRRV
Intron Amino Acid Position:
776

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
73.9
0.54
1
66.2
39.5
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
49.6
0.05
2
70.74
45.5

Associated Gene:

Gene:
BAHD1
Ensembl Gene ID:
ENSAPLG00000000752
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039100
33612255 - 33629542
17288