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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33695556_33696434_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33695556 - 33696434
Intron Length:
879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
CTCCATCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
TTTTCCTCCATC
Flanking Amino Acid:
THPELVNNLYKKGIIKSQRV
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.6
33.8
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
69.4
0.44
0.8
61.3
34.7
Minor 5ss
32.8
-2
2.7
42.3
38.4
Minor BPS
62.5
0.38
2
78.52
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004765
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004942
33694944 - 33699549
4606