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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33696540_33697069_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33696540 - 33697069
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GGCTTCCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TATCATGTAACT
Flanking Amino Acid:
FPYMDSPQSIGYKATISAPH
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
73.3
0.52
0.9
70
36.6
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
50.3
0.09
2.2
75.69
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004765
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004942
33694944 - 33699549
4606