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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33697686_33697924_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33697686 - 33697924
Intron Length:
239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTATAT
U12 Branch Point Sequence:
CTTTCCTTTGTA
Flanking Amino Acid:
GYLTACFARMMGPTGKAVGV
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.3
36.4
Major BPS
48.5
-0
1.4
46.7
46.7
Major PPT
85.2
0.79
0.6
80.9
24.2
Minor 5ss
44.3
-0.6
2.8
53.8
44.4
Minor BPS
44.7
-0.4
3.6
70.72
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004765
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004942
33694944 - 33699549
4606