About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33698046_33698742_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33698046 - 33698742
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCTCT
5'SS Class:
major
3'SS Sequence:
TTCCCTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAA
U12 Branch Point Sequence:
GTCTGAACAAGT
Flanking Amino Acid:
LLSSGRVKLVVGDGRQGYPE
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
68.4
39.3
Major BPS
64.4
0.36
1.2
57.3
41.7
Major PPT
82.5
0.73
0.7
77.1
24.9
Minor 5ss
40.6
-1
3
48.7
47
Minor BPS
36.2
-0.9
2.3
55.08
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004765
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004942
33694944 - 33699549
4606