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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33708734_33709155_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33708734 - 33709155
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TATGCACTAATA
Flanking Amino Acid:
DKIYTDPNMENDNTEHMRRR
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.8
33.2
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
41.3
-1
2.8
49.5
41.2
Minor BPS
49.5
-0
2
66.65
39.6

Associated Gene:

Gene:
KNL1
Ensembl Gene ID:
ENSAPLG00000019252
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047019
33708137 - 33735721
27585
ENSAPLT00000043186
33708664 - 33735721
27058
ENSAPLT00000041578
33708137 - 33737273
29137