Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33713622_33713968_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33713622 - 33713968

Intron Length:

347

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTTGACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATAAAAT

U12 Branch Point Sequence:

TTTCTTTTGACA

Flanking Amino Acid:

EPEDVPCEITGMNTLLHAPI

Intron Amino Acid Position:

111

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

76.6

34.9

Major BPS

61.8

0.29

1.1

67.7

34.6

Major PPT

85.5

0.8

0.9

83.5

31.6

Minor 5ss

38.5

-1.3

2.9

46.1

43.6

Minor BPS

71.5

0.67

1.1

79.17

Associated Gene:

Gene:

KNL1

Ensembl Gene ID:

ENSAPLG00000019252

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047019

33708137 - 33735721

27585

ENSAPLT00000043186

33708664 - 33735721

27058

ENSAPLT00000041578

33708137 - 33737273

29137