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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33720659_33721368_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33720659 - 33721368
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTGATACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
LVGGTSLDLQVTSGALSQSQ
Intron Amino Acid Position:
1865

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
63.3
0.3
1
56.3
43.3
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
KNL1
Ensembl Gene ID:
ENSAPLG00000019252
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047019
33708137 - 33735721
27585
ENSAPLT00000043186
33708664 - 33735721
27058
ENSAPLT00000041578
33708137 - 33737273
29137