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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33721514_33722390_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33721514 - 33722390
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTTTTCTTATTT
Flanking Amino Acid:
DSVKADTELTIQRCSQMESQ
Intron Amino Acid Position:
1913

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.3
36.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.7
0.78
0.7
78.2
36
Minor 5ss
39.6
-1.2
3.3
57.8
40.6
Minor BPS
68.8
0.67
1.6
82.89
39.2

Associated Gene:

Gene:
KNL1
Ensembl Gene ID:
ENSAPLG00000019252
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047019
33708137 - 33735721
27585
ENSAPLT00000043186
33708664 - 33735721
27058
ENSAPLT00000041578
33708137 - 33737273
29137