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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33722670_33726215_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33722670 - 33726215
Intron Length:
3546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATCA
Flanking Amino Acid:
KPRQSHLPANCAVSAPPTPE
Intron Amino Acid Position:
1969

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
77.8
30.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
88.4
0.86
0.8
80.8
36.8
Minor 5ss
34.2
-1.8
3.4
48
41.4
Minor BPS
69.5
0.61
1.8
83.94
36.4

Associated Gene:

Gene:
KNL1
Ensembl Gene ID:
ENSAPLG00000019252
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047019
33708137 - 33735721
27585
ENSAPLT00000043186
33708664 - 33735721
27058
ENSAPLT00000041578
33708137 - 33737273
29137