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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33729022_33729539_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33729022 - 33729539
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGC
5'SS Class:
major
3'SS Sequence:
TTTCCCGTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
CACATTGCAACA
Flanking Amino Acid:
LYSKLLQSAQEQYEKLQSRI
Intron Amino Acid Position:
2077

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
66.7
39.8
Major BPS
61.1
0.28
1
67
29.8
Major PPT
75
0.56
0.8
73.4
31.5
Minor 5ss
37.1
-1.5
3.3
50.7
45.8
Minor BPS
39.8
-0.7
2
44.26
38.6

Associated Gene:

Gene:
KNL1
Ensembl Gene ID:
ENSAPLG00000019252
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047019
33708137 - 33735721
27585
ENSAPLT00000043186
33708664 - 33735721
27058
ENSAPLT00000041578
33708137 - 33737273
29137