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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33729628_33731435_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33729628 - 33731435
Intron Length:
1808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ACCTTCTGATCC
Flanking Amino Acid:
AESCLAELEADSEWEDCETD
Intron Amino Acid Position:
2106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
81.7
0.71
0.8
76.9
32
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
48.9
-0.1
1.7
56.76
42.1

Associated Gene:

Gene:
KNL1
Ensembl Gene ID:
ENSAPLG00000019252
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047019
33708137 - 33735721
27585
ENSAPLT00000043186
33708664 - 33735721
27058
ENSAPLT00000041578
33708137 - 33737273
29137