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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33732031_33732142_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33732031 - 33732142
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAGAT
U12 Branch Point Sequence:
TTTGCTTTATCT
Flanking Amino Acid:
SLKAQEEELERELSDLETEN
Intron Amino Acid Position:
2146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
65.3
0.38
1
60.7
37.6
Major PPT
89.8
0.89
0.7
84.9
29.8
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
69.7
0.7
1.7
87.39
38.7

Associated Gene:

Gene:
KNL1
Ensembl Gene ID:
ENSAPLG00000019252
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047019
33708137 - 33735721
27585
ENSAPLT00000043186
33708664 - 33735721
27058
ENSAPLT00000041578
33708137 - 33737273
29137