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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3373470_3414017_F

Intron Information:

Intron Rank:
146177
Intron Class:
major
Intron Phase:
Intron Coordinates:
3373470 - 3414017
Intron Length:
40548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTCTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.9
0.65
0.8
78.5
34
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
70.4
0.72
1.6
88.88
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028743
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017375
3373193 - 3430164
56972
ENSAPLT00000046106
3373347 - 3414330
40984
ENSAPLT00000032093
3373193 - 3530785
157593