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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33742731_33743262_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33742731 - 33743262
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGATT
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAACAA
U12 Branch Point Sequence:
TTTTTCCCCATA
Flanking Amino Acid:
GSKELDKLLQGGIETGSITE
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
75.3
40.4
Major BPS
53
0.08
1
61.4
34.3
Major PPT
81.8
0.72
0.7
77.6
24.5
Minor 5ss
36.9
-1.5
3.6
57
47.4
Minor BPS
46.3
-0.3
2.2
67.7
39.2

Associated Gene:

Gene:
RAD51
Ensembl Gene ID:
ENSAPLG00000004452
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004596
33740598 - 33749709
9112