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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33743355_33744258_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33743355 - 33744258
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CGTTCATTCACA
Flanking Amino Acid:
LCHTLAVTCQLPIDRGGGEG
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
33.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75
0.56
0.9
66.3
40.7
Minor 5ss
38.2
-1.3
3
49.5
41.2
Minor BPS
55.1
0.15
2.1
69.26
42.8

Associated Gene:

Gene:
RAD51
Ensembl Gene ID:
ENSAPLG00000004452
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004596
33740598 - 33749709
9112