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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33746514_33748744_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33746514 - 33748744
Intron Length:
2231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATGAGA
5'SS Class:
major
3'SS Sequence:
TTAACTTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTGTATTTAACT
Flanking Amino Acid:
YQASAMMAESRYALLIVDSA
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
62.8
43.1
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
78.7
0.65
0.9
70.1
41
Minor 5ss
32.2
-2
3.1
40.5
45.5
Minor BPS
76
0.89
1.4
88.78
36.1

Associated Gene:

Gene:
RAD51
Ensembl Gene ID:
ENSAPLG00000004452
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004596
33740598 - 33749709
9112