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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33748875_33749139_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33748875 - 33749139
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GGGTTCTGATTT
Flanking Amino Acid:
LRMLLRLADEFGVAVVITNQ
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
85.8
0.81
0.6
81.6
23.2
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
48.1
-0
1.7
61.9
42.2

Associated Gene:

Gene:
RAD51
Ensembl Gene ID:
ENSAPLG00000004452
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004596
33740598 - 33749709
9112