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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33771576_33774193_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33771576 - 33774193
Intron Length:
2618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCAGT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
SKAVRVYIAKCYKDLGNNSA
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.2
72.7
44.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
46.6
-0.3
2.7
67
43.9
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
RMDN3
Ensembl Gene ID:
ENSAPLG00000003985
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045109
33768809 - 33805989
37181