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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33774031_33774193_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33774031 - 33774193
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCAGT
5'SS Class:
major
3'SS Sequence:
ATTCTATTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TGTTCTATAAAA
Flanking Amino Acid:
SKAVRVYIAKAAMVTCKPHF
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.2
72.7
44.5
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
68.7
0.42
1.1
72.4
36.3
Minor 5ss
46.6
-0.3
2.7
67
43.9
Minor BPS
62
0.37
1.7
74.67
36.2

Associated Gene:

Gene:
RMDN3
Ensembl Gene ID:
ENSAPLG00000003985
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004106
33773881 - 33805163
31283