About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33814185_33818796_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33814185 - 33818796
Intron Length:
4612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TTCCTGCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TCCACCTCATCT
Flanking Amino Acid:
ATKRNMLGNHFWEYYVDDAP
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
69.8
34.3
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
82.3
0.73
0.8
76.5
32.1
Minor 5ss
35.5
-1.6
3.2
47.5
42.3
Minor BPS
50.3
0.09
1.9
68.8
47.6

Associated Gene:

Gene:
GCHFR
Ensembl Gene ID:
ENSAPLG00000025385
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043954
33811688 - 33819692
8005