Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33829516_33830996_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33829516 - 33830996

Intron Length:

1481

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAATA

5'SS Class:

strong_major

3'SS Sequence:

CTCTTCTCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TCATCTTTATTT

Flanking Amino Acid:

IRLEREQRIQGRQEGNGAEG

Intron Amino Acid Position:

159

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.7

85.9

23.8

Major BPS

100

1.24

0.5

100

Major PPT

81.3

0.7

77.1

Minor 5ss

31.6

-2.1

39.7

45.8

Minor BPS

64.2

0.52

1.6

76.15

41.3

Associated Gene:

Gene:

DNAJC17

Ensembl Gene ID:

ENSAPLG00000003714

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027805

33819887 - 33836350

16464

ENSAPLT00000003864

33819949 - 33836350

16402