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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33875012_33876254_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33875012 - 33876254
Intron Length:
1243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCCAGTT
5'SS Class:
major
3'SS Sequence:
GTTTTCCTGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCCTGAAAG
Flanking Amino Acid:
LRNYSASLEEGDLGMFEMYG
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.2
66.1
39.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
65.6
0.35
1.2
67.7
38.2
Minor 5ss
35.4
-1.7
3.8
55.8
48.4
Minor BPS
71.9
0.55
1.6
78.15
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003890
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003978
33874937 - 33889834
14898