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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33876402_33879762_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33876402 - 33879762
Intron Length:
3361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGAAT
5'SS Class:
major
3'SS Sequence:
TTTTTCACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTCTTTTTCACT
Flanking Amino Acid:
IEDEFLIGDEVLVAPITEKG
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
74.7
37
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.5
0.84
0.7
82.6
27.5
Minor 5ss
27.1
-2.6
3.3
38.2
47
Minor BPS
58.5
0.35
1.8
74.22
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003890
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003978
33874937 - 33889834
14898