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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33879943_33880681_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33879943 - 33880681
Intron Length:
739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TATCTCTCATGC
Flanking Amino Acid:
TPPWLCCDTWVLNLTRQCIQ
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
77.9
36.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
75.8
0.58
0.9
70.3
34.7
Minor 5ss
45.9
-0.4
2.5
54.6
42.8
Minor BPS
44.7
-0.4
2
56.95
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003890
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003978
33874937 - 33889834
14898